aed_strand_annotation_filter

Command aed_strand_annotation_filter filters overlapping CDS based on their AED scores. This step is done when you perform gene selection with select. This tool is usefull to filter out results, if you use a gene predictor which predict gene on the 2 strand separetaly.

usage

$ ingenannot -v 2 aed_strand_annotation_filter input output

positional arguments:

Input	GFF File with AED tags
Output	Filtered output annotation file

optional arguments:

-h, –help

show this help message and exit

inputs

Gff_genes in GFF format with aed annotations.

outputs

Filtered gff file, without overlapping CDS based on AED scores.