Evaluate gene annotations [UNDER DEVELOPMENT]

We will propose a fully integrated Snakemake workflow to evaluate the quality of gene annotations using InGenAnnot tools. We are actively working on these workflows, and they will be released soon.

Workflows:

  • ingenannot_data_workflow: a Snakemake workflow to download proteins and RNA-Seq runs from Uniprot/SRA, respectively.

  • ingenannot_evaluation_workflow: a Snakemake worklow to evaluate the quality of your annotation datasets compare to evidence sources.

Steps:

1) Download datasets from databanks using `ingenannot_data_workflow`

2) Evaluate your gene annotation dataset using `ingenannot_evaluation_workflow`

Example cases:

case 1: Saccharomyces cerevisiae

case 2: Botrytis cinerea

case 3: Arabidposis thaliana